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Multiple Choice
Where would a hydrophobic amino acid R group (side group) most likely be found in a properly folded protein?
A
On the exterior surface of the protein, interacting with water
B
In the interior of the protein, away from water
C
In the active site of the protein, interacting with substrates
D
On the surface of the protein, interacting with polar molecules
Verified step by step guidance
1
Understand the nature of hydrophobic amino acids: Hydrophobic amino acids have side chains that do not interact favorably with water. They tend to avoid aqueous environments.
Consider the structure of a protein: Proteins are composed of amino acids that fold into specific three-dimensional shapes. This folding is influenced by the properties of the amino acids, including their hydrophobic or hydrophilic nature.
Analyze the environment within a folded protein: In a properly folded protein, hydrophobic amino acids are typically found in the interior of the protein structure. This positioning minimizes their exposure to water, which is energetically favorable.
Evaluate the options given: The exterior surface of a protein is usually in contact with water, making it an unfavorable location for hydrophobic amino acids. The active site may interact with substrates, but it is not necessarily hydrophobic. The surface interacting with polar molecules is also not ideal for hydrophobic residues.
Conclude the most likely location: Based on the properties of hydrophobic amino acids and protein folding, the interior of the protein, away from water, is the most likely location for hydrophobic amino acid side groups.