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DNA Synthesis & Repair - General Biology

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  • Semiconservative replication

    Each new DNA molecule consists of one old (parent) strand and one newly synthesized strand, proven by the Meselson-Stahl experiment.

  • Meselson-Stahl experiment key result

    Generation 1 showed a hybrid band, ruling out conservative replication; Generation 2 showed hybrid and light bands, ruling out dispersive replication.

  • DNA strand polarity and synthesis direction

    DNA strands are antiparallel; synthesis occurs only 5′→3′ by adding nucleotides to the 3′-OH end.

  • Leading strand synthesis

    Continuous synthesis toward the replication fork, requiring one RNA primer and extended by DNA polymerase III.

  • Lagging strand synthesis

    Discontinuous synthesis away from the fork, made in Okazaki fragments each started by RNA primers and later joined.

  • Okazaki fragments

    Short DNA segments synthesized discontinuously on the lagging strand, later joined by DNA ligase.

  • Role of helicase

    Unwinds and separates the two DNA strands at the replication fork to open the double helix.

  • Function of primase

    Synthesizes short RNA primers providing the 3′-OH group needed for DNA polymerase to start synthesis.

  • DNA polymerase III function

    Main enzyme that adds dNTPs 5′→3′ to extend the new DNA strand from the RNA primer.

  • DNA polymerase I function

    Removes RNA primers and replaces them with DNA nucleotides.

  • DNA ligase role

    Seals nicks in the sugar-phosphate backbone, joining Okazaki fragments into a continuous strand.

  • Topoisomerase function

    Relieves supercoiling tension ahead of the replication fork by cutting and resealing DNA strands.

  • Single-strand binding proteins (SSBs)

    Bind and stabilize separated single DNA strands to prevent reannealing or hairpin formation.

  • End-replication problem

    On the lagging strand, removal of the final RNA primer leaves a gap that DNA polymerase cannot fill, causing chromosome shortening.

  • Telomeres

    Repetitive, gene-free DNA sequences at chromosome ends that protect coding regions from shortening.

  • Telomerase enzyme

    Extends telomeres using its own RNA template, preventing chromosome shortening in germ and cancer cells.

  • Proofreading during DNA replication

    DNA polymerase’s ε subunit removes incorrectly paired bases immediately during synthesis, reducing errors.

  • Mismatch repair system

    Detects and corrects mismatches missed by proofreading after DNA synthesis is complete.

  • Nucleotide excision repair (NER)

    Removes bulky DNA damage like thymine dimers caused by UV light, then fills and seals the gap.

  • Thymine dimer

    UV-induced covalent bond between adjacent thymines that distorts DNA and blocks replication and transcription.

  • Energy source for DNA synthesis

    dNTPs provide energy by cleaving two phosphates as pyrophosphate, which is hydrolyzed to drive polymerization.

  • Replication origin

    Specific DNA sequence where replication begins; bacteria have one, eukaryotes have many.

  • Replication bubble and forks

    Region of unwound DNA with two Y-shaped replication forks moving bidirectionally.

  • Sliding clamp function

    Holds DNA polymerase onto the DNA template, increasing processivity and speed of synthesis.