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Energy, Metabolism, and Enzymes in General Biology

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  • Define metabolism

    Metabolism is the sum of all chemical reactions in a biological system, including anabolic and catabolic pathways.

  • Difference between anabolic and catabolic pathways

    Anabolic pathways build complex molecules from simple ones (e.g., synthesis of proteins). Catabolic pathways break down complex molecules into simpler ones, releasing energy (e.g., cellular respiration).

  • Types of energy relevant to biology

    Kinetic energy is energy of motion; Potential energy is stored energy; Chemical energy is potential energy stored in chemical bonds, such as in ATP.

  • Role of ATP in biological reactions

    ATP stores chemical energy in its phosphate bonds and drives biological reactions by transferring a phosphate group, releasing energy.

  • How is ATP regenerated?

    ATP is regenerated by adding a phosphate group to ADP through cellular respiration or photosynthesis, restoring its energy storage capacity.

  • What are enzymes and how do they work?

    Enzymes are proteins that speed up chemical reactions by lowering activation energy. They bind substrates at the active site, forming an enzyme-substrate complex.

  • How do enzymes bind only specific substrates?

    Enzymes have a specific 3D structure and active site shape that fits only certain substrates, based on protein folding and R group interactions.

  • Role of cofactors and coenzymes

    Cofactors (inorganic ions) and coenzymes (organic molecules) assist enzymes by stabilizing substrate binding or participating in reactions.

  • Describe competitive inhibition

    Competitive inhibitors bind to the enzyme's active site, blocking substrate binding and reducing enzyme activity.

  • Describe non-competitive inhibition

    Non-competitive inhibitors bind to an allosteric site, changing enzyme shape and reducing activity without blocking substrate binding.

  • Can competitive inhibition be overcome?

    Yes, by increasing substrate concentration, which outcompetes the inhibitor for the active site.

  • Can non-competitive inhibition be overcome?

    No, because the inhibitor changes enzyme shape regardless of substrate concentration.

  • What is feedback inhibition?

    Feedback inhibition occurs when the end product of a pathway binds an enzyme allosterically to stop the pathway, regulating cell metabolism.

  • Effect of enzyme denaturation

    Denaturation disrupts protein structure, especially tertiary and quaternary levels, causing loss of enzyme function.

  • Environmental factors affecting enzyme activity

    Temperature, pH, and chemical environment can alter enzyme structure and function by affecting protein folding and stability.

  • Optimal temperature for enzyme activity

    Enzymes have an optimal temperature where activity is highest; above or below this, activity decreases due to denaturation or reduced kinetic energy.

  • Optimal pH for digestive enzymes

    Pepsin works best in acidic pH (~2) in the stomach; trypsin works best in basic pH (~8) in the small intestine.

  • How beta-amyloid peptide causes Alzheimer's disease

    Beta-amyloid peptides aggregate into plaques in the brain, disrupting neuron function and contributing to Alzheimer's disease.

  • Identify enzyme, substrate, and product in beta-amyloid formation

    Enzyme: beta-secretase (BACE1); Substrate: amyloid precursor protein (APP); Product: beta-amyloid peptide. All are proteins or peptides.

  • Designing a competitive inhibitor drug

    A competitive inhibitor drug must structurally resemble the substrate to bind the enzyme's active site and block substrate binding.