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GOB Chemistry: DNA, Chromosomes, and Genes

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  • What is chromatin?

    Chromatin is a compact tangle of DNA twisted around proteins called histones, found in the nucleus when a cell is not dividing.

  • How does chromatin change during cell division?

    Chromatin organizes into chromosomes, each containing a DNA molecule duplicated so each new cell gets a complete copy.

  • What is a gene?

    A gene is an individual segment of DNA that contains instructions to synthesize a single polypeptide.

  • What are nucleic acids composed of?

    Nucleic acids are polymers of nucleotides, each made of a five-carbon sugar, a cyclic amine base, and a phosphate group.

  • Difference between DNA and RNA sugars?

    RNA contains D-ribose, while DNA contains 2-deoxyribose, missing an oxygen atom at the C2 position.

  • Which bases are unique to DNA and RNA?

    Thymine is only in DNA; Uracil is only in RNA; adenine, guanine, and cytosine are in both.

  • What is a nucleoside?

    A nucleoside is a five-carbon sugar bonded to a cyclic amine base without a phosphate group.

  • How are nucleotides named?

    Nucleotides are named by adding 5'-monophosphate to the nucleoside name, e.g., adenosine 5'-monophosphate (AMP).

  • What is the role of ATP?

    Adenosine triphosphate (ATP) is a key biochemical energy source, releasing energy when converted to ADP.

  • How are nucleotides linked in nucleic acids?

    Nucleotides connect via phosphodiester linkages between the 3' OH of one sugar and the 5' phosphate of the next.

  • What is the directionality of a nucleotide chain?

    A nucleotide chain has a free phosphate at the 5' end and a free OH at the 3' end; sequences are read 5' to 3'.

  • What is the Watson-Crick model of DNA?

    DNA is a right-handed double helix with sugar-phosphate backbones outside and complementary base pairs inside.

  • What does antiparallel mean in DNA strands?

    The two DNA strands run in opposite directions: one 5' to 3', the other 3' to 5'.

  • Which bases pair in DNA and how?

    Adenine pairs with thymine via 2 hydrogen bonds; cytosine pairs with guanine via 3 hydrogen bonds.

  • What is DNA replication?

    DNA replication copies DNA before cell division, involving unwinding by helicase and synthesis by DNA polymerase.

  • What are replication forks?

    Replication forks are branch points where DNA strands separate to allow replication to begin.

  • How does DNA polymerase synthesize new strands?

    DNA polymerase adds nucleotides to the 3' OH of the growing strand, reading the template 3' to 5' and synthesizing 5' to 3'.

  • Difference between leading and lagging strands?

    The leading strand is synthesized continuously 5' to 3'; the lagging strand is synthesized in Okazaki fragments.

  • What is semiconservative replication?

    Each new DNA double helix contains one original template strand and one newly synthesized strand.

  • What are the main types of RNA and their functions?

    mRNA carries genetic info from DNA; tRNA delivers amino acids; rRNA forms ribosome structure for protein synthesis.

  • What is transcription?

    Transcription is the synthesis of RNA from a DNA template strand by RNA polymerase.

  • How is mRNA related to DNA strands?

    mRNA is complementary to the DNA template strand and matches the informational strand except U replaces T.

  • What are exons and introns?

    Exons code for proteins; introns are non-coding sequences removed during mRNA processing.

  • What is a codon?

    A codon is a sequence of three nucleotides in mRNA that codes for an amino acid or signals translation stop.

  • What are the stages of protein synthesis?

    Protein synthesis involves initiation, elongation, and termination at the ribosome.

  • What happens during initiation of translation?

    mRNA, the first tRNA with methionine, and the small ribosomal subunit assemble; the large subunit then joins.

  • How does elongation proceed in translation?

    New tRNAs bring amino acids, peptide bonds form, and the ribosome shifts to add amino acids to the chain.

  • What signals termination of translation?

    A stop codon signals release factors to cleave the polypeptide and disassemble the translation complex.