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Chapter 16: Amines – Structure, Properties, and Biological Significance

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Chapter 16: Amines

16.1 Classifying Amines

Amines are organic compounds derived from ammonia (NH3), in which one or more hydrogen atoms are replaced by organic groups. The classification of amines is based on the number of organic groups attached to the nitrogen atom.

  • Primary amine (1°): One organic group attached to nitrogen (RNH2).

  • Secondary amine (2°): Two organic groups attached to nitrogen (R2NH).

  • Tertiary amine (3°): Three organic groups attached to nitrogen (R3N).

  • Quaternary ammonium ion: Four organic groups attached to nitrogen, resulting in a positively charged ion (R4N+).

  • Cyclic amines: Organic groups may be connected in a ring structure, forming heterocyclic amines.

Classification of amines: ammonia, primary, secondary, tertiary, acyclic, and pyrrolidineAmines with organic groups connected through a ringQuaternary ammonium ion structure

Key Point: The lone pair of electrons on the nitrogen atom is central to amine chemistry, allowing for the formation of quaternary ammonium ions and influencing basicity.

Alkyl and aryl groups bonded to amine nitrogen

16.2 Naming and Drawing Amines

The nomenclature of amines depends on their classification and structure. The naming conventions are as follows:

  • Primary alkyl amines: Name the alkyl group and add the suffix "-amine."

  • Secondary and tertiary amines (simple): Use "di-" or "tri-" prefixes with the alkyl group name and add "-amine."

  • Secondary and tertiary amines (complex): Name as N-substituted derivatives of the largest parent group; other groups are N-substituents.

  • Amino group: The –NH2 group is called an amino group; "amino-" is used as a prefix when it is a substituent.

  • Aromatic amines: Often known by common names, e.g., aniline.

Examples of naming primary aminesExamples of naming simple secondary and tertiary aminesExamples of naming more complex secondary and tertiary aminesExamples of amino group and aromatic amines

Proteins are polymers of amino acids, which have the general structure H2N—CHR—COOH.

General structure of an amino acid

Worked Example 16.1: N,N-diethylbutylamine

Analysis: The parent compound is butylamine; N,N indicates two ethyl groups bonded to nitrogen. Solution: Three alkyl groups are bonded to N, so it is a tertiary amine.

Structure of N,N-diethylbutylamine

Worked Example 16.2: N-methylcyclohexylamine

Analysis: Two groups (cyclohexyl and methyl) are bonded to N. Solution: It is a secondary amine.

Structure of N-methylcyclohexylamine

Worked Example 16.3: Octahydroindolizine

Analysis: Nitrogen is attached to three carbons in a ring. Solution: It is a tertiary amine.

Structure of octahydroindolizineBond lines indicating three carbons attached to nitrogen

16.3 Properties of Amines

Amines exhibit characteristic physical and chemical properties due to the lone pair of electrons on nitrogen. They act as weak Brønsted-Lowry bases or Lewis bases.

  • Lewis base: Compound with an unshared pair of electrons.

  • Hydrogen bonding: Primary and secondary amines can hydrogen bond with each other and with water.

  • Boiling points: Primary and secondary amines have higher boiling points than alkanes of similar size; alcohols have even higher boiling points due to more hydrogen bonding.

  • Solubility: Amines with up to six carbon atoms are appreciably soluble in water.

  • Odor and toxicity: Many amines have strong odors and can be toxic or irritating.

Lewis base behavior of aminesHydrogen bonding in aminesBoiling points comparison: butane, propylamine, propanol

16.4 Heterocyclic Nitrogen Compounds

Heterocyclic compounds contain nitrogen atoms within a ring structure. These may be aromatic or nonaromatic and are common in biological molecules and drugs.

  • Examples: Piperidine (saturated cyclic amine), Pyridine (aromatic amine).

Piperidine and pyridine structures

Compound

Structure

Notes

Pyrrolidine

Ring with N

In nicotine and alkaloids

Imidazole

Ring with two N

In histamine

Purine

Double ring with N

In DNA, anticancer drugs

Indole

Double ring with N

In alkaloids and drugs

Piperidine

Ring with N

In drugs

Pyridine

Ring with N

In drugs

Pyrimidine

Ring with N

In DNA, B vitamins

Quinoline

Double ring with N

Antibacterial agents

Table of heterocyclic nitrogen compounds

16.5 Basicity of Amines

Amines are weak bases in aqueous solution, forming OH– and ammonium ions. Their basicity depends on their structure.

  • Reaction with water: Amines accept a hydrogen ion from water, forming an ammonium ion and hydroxide ion.

  • Reaction with acids: Amines react with hydronium ions to form ammonium ions and water.

  • Naming: Alkylamine cations are named by replacing "-amine" with "-ammonium."

  • Acidity: Ammonium ions with at least one hydrogen are weakly acidic and can react with bases to regenerate the amine.

  • Biological context: Amines exist as ammonium ions in blood and body fluids.

  • Basicity comparison: Nonaromatic amines > Ammonia > Aromatic amines.

Structures of alkylammonium ionsHistamine and serotonin structures

Example Equations:

Balanced equations for ammonia and ethylamine reactions

Worked Example 16.5: Histamine acetate reacts with KOH to regenerate the free amine, water, and potassium acetate.

Histamine acetate reaction with KOHAmmonium ion with acidic hydrogenReaction of ammonium ion with hydroxideBalanced overall reaction: histamine acetate and KOH

16.6 Amine Salts

Ammonium salts are ionic compounds formed from amines and acids. They are generally odorless, white, crystalline solids with high solubility.

  • Naming: Combine the names of the amine and the acid (e.g., methylamine hydrochloride).

  • Regeneration: Free amines can be regenerated from their salts by treatment with a base.

  • Quaternary ammonium ions: Have four organic groups, are permanently charged, and are not affected by pH changes.

  • Medicinal use: Benzalkonium chlorides are used as antiseptics and disinfectants.

Ammonium salt structureRegeneration of free amine from amine saltBenzalkonium chloride structure

16.7 Amines in Plants: Alkaloids

Alkaloids are naturally occurring, nitrogen-containing compounds isolated from plants. They are typically basic, bitter, and often poisonous.

  • Coniine: Extracted from poison hemlock; toxic to humans and animals.

  • Atropine: Found in deadly nightshade; acts on the central nervous system and used in medicine.

  • Solanine: Found in potatoes and tomatoes; production increases with sunlight or improper storage.

  • Morphine and codeine: Present in poppy; used medicinally for pain relief.

  • Heroin: Synthesized from morphine; converted back to morphine in the body.

Name

Structure

Properties and Uses

Coniine

Structure shown

Poison hemlock; toxic, used historically for executions

Atropine

Structure shown

Deadly nightshade; CNS effects, used in medicine

Solanine

Structure shown

Potatoes/tomatoes; toxic, increased by sunlight

Morphine

Structure shown

Poppy; pain relief, medicinal use

Codeine

Structure shown

Poppy; pain relief, medicinal use

Heroin

Structure shown

Synthesized from morphine; converted in body

Table of alkaloids: coniine, atropine, solanineTable of alkaloids: morphine, codeine, heroinHeroin structure and conversion to morphine

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