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Chapter 8-Microbial Metabolism and Enzyme Function: Tools of the Laboratory

Study Guide - Smart Notes

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Metabolism of Microbes

Overview of Metabolism

Metabolism encompasses all chemical and physical processes occurring within a microbial cell. These processes are essential for growth, energy production, and cellular maintenance. Metabolism is divided into two major types of chemical reactions:

  • Catabolism: Degradative reactions that break the bonds of larger molecules, forming smaller molecules and releasing energy.

  • Anabolism: Biosynthetic reactions that build larger macromolecules from smaller molecules, requiring energy input.

Example: Catabolism of glucose produces ATP and NADH, which are then used in anabolic processes to synthesize cellular components.

Metabolic Pathways in Microbes

Microbial cells manage energy and nutrients through interconnected catabolic and anabolic pathways. Catabolic reactions provide energy and building blocks, while anabolic reactions use these resources to construct macromolecules.

  • Catabolism releases energy and produces end products such as CO2 and H2O.

  • Anabolism requires energy (often in the form of ATP and NADH) to synthesize carbohydrates, proteins, and lipids.

Enzymes: Biological Catalysts

Role and Properties of Enzymes

Enzymes are biological catalysts that accelerate chemical reactions by lowering the activation energy required for the reaction to proceed. They are not consumed or permanently altered during the reaction and provide a physical site for substrate molecules to interact.

  • Activation Energy: The energy barrier that must be overcome for a reaction to occur. Enzymes lower this barrier, increasing reaction rates.

  • Enzymes are highly specific for their substrates.

Example: The enzyme catalase speeds up the breakdown of hydrogen peroxide into water and oxygen.

Enzyme Structure

Enzymes can be classified based on their composition:

  • Simple enzymes: Consist of protein alone.

  • Conjugated enzymes (holoenzymes): Contain both a protein portion (apoenzyme) and a nonprotein portion (cofactor).

  • Cofactors: Nonprotein components that assist enzyme function. These can be inorganic elements (metal ions such as iron, copper, magnesium) or organic molecules (coenzymes).

Example: Many enzymes require magnesium ions or coenzymes derived from vitamins to function properly.

Examples of Enzymes and Cofactors

Enzymes often require specific cofactors to catalyze reactions. The following table summarizes selected enzymes, their actions, and required cofactors:

Enzyme

Action

Cofactor Required

Catalase

Breaks down hydrogen peroxide

Iron (Fe)

Oxidase

Adds electrons to oxygen

Iron, copper (Cu)

Hexokinase

Transfers phosphate to glucose

Magnesium (Mg)

Arginase

Acts on the amino acid arginine

Manganese

Nitrate reductase

Reduces nitrate to nitrite

Molybdenum (Mo)

DNA polymerase

Synthesis of DNA

Zinc (Zn) and Mg

Botulinum toxin

Hydrolyzes protein needed for vesicle transport

Zinc

Pyruvate dehydrogenase

Converts pyruvic acid to acetyl CoA and CO2

Thiamine and magnesium

Succinate dehydrogenase

Oxidizes succinate to fumarate in the Krebs cycle

FAD (contains riboflavin)

Additional info: The first seven cofactors listed are metals, while the last two are coenzymes containing vitamins.

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