BackFundamental Chemistry Concepts for Biology and Organic Chemistry
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Atoms and Atomic Structure
Definition and Components of Atoms
An atom is the smallest unit of an element that retains the properties of that element. Atoms are the fundamental building blocks of matter and are composed of subatomic particles.
Nucleus: The central core of the atom, containing protons and neutrons.
Proton: A positively charged particle located inside the nucleus.
Neutron: A particle found in the nucleus with no electrical charge.
Electron: A negatively charged particle that orbits the nucleus in energy levels.
Energy Levels and Electron Arrangement
Electrons occupy specific regions called energy levels around the nucleus. Each energy level can hold a limited number of electrons:
The first energy level can hold 2 electrons.
The second energy level can hold 8 electrons.
The third energy level can hold 18 electrons.
For an atom to be stable, its energy levels must be filled according to the number of electrons present.
Example: An atom with 8 electrons will have 2 electrons in the first energy level and 6 in the second energy level.
Additional info: The stability of an atom is often determined by the completion of its outermost energy level (octet rule).
Elements and the Periodic Table
Definition and Properties of Elements
An element is a pure substance that cannot be broken down into simpler substances by chemical means. There are about 90 naturally occurring elements, all listed on the Periodic Table.
Only 25 elements are essential for living organisms.
96% of the mass of a human is composed of carbon (C), hydrogen (H), nitrogen (N), and oxygen (O).
Atomic Number and Atomic Mass
Atomic Number: The number of protons in the nucleus of an atom; also equals the number of electrons in a neutral atom.
Atomic Mass: The sum of protons and neutrons in the nucleus.
Example: Carbon has an atomic number of 6 (6 protons) and an atomic mass of 12 (6 protons + 6 neutrons).
Ions and Isotopes
Ions
Ions are atoms or molecules that have gained or lost electrons, resulting in a net charge.
Number of protons does not change in ions.
Example: Na+ has lost one electron compared to neutral sodium.
Isotopes
Isotopes are atoms of the same element with different numbers of neutrons.
Example: Carbon-12 (6 protons, 6 neutrons), Carbon-13 (6 protons, 7 neutrons), Carbon-14 (6 protons, 8 neutrons).
Compounds, Molecules, and Chemical Bonds
Compounds and Molecules
Compound: A substance made of two or more different elements bonded together (e.g., NaCl, H2O).
Molecule: A group of atoms held together by covalent bonds (e.g., O2).
Covalent Bonds
Covalent bonds form when two atoms share electrons.
Polar Covalent Bond: Electrons are shared unequally, resulting in partial charges (e.g., H2O).
Nonpolar Covalent Bond: Electrons are shared equally (e.g., H2, ethane).
Ionic Bonds
Ionic bonds form when atoms transfer electrons, resulting in oppositely charged ions that attract each other.
Example: Na+ + Cl- → NaCl
Hydrogen Bonds
Hydrogen bonds are weak attractions between a hydrogen atom in one molecule and a highly electronegative atom (such as oxygen or nitrogen) in another molecule. These bonds are crucial for the structure and properties of water and biological macromolecules.
Hold water molecules together.
Help stabilize large molecules like proteins and DNA.
Properties of Water
Polarity and Hydrogen Bonding
Water is a polar molecule due to the uneven distribution of electrons between oxygen and hydrogen atoms. Oxygen has a stronger pull on electrons, making the oxygen side slightly negative and the hydrogen side slightly positive.
Cohesion and Adhesion
Cohesion: Attraction between molecules of the same substance (e.g., water molecules stick together).
Adhesion: Attraction between molecules of different substances (e.g., water and glass, causing meniscus and capillary action).
High Specific Heat Capacity
Water can absorb large amounts of heat due to its hydrogen bonds, helping regulate temperature in organisms and environments.
Evaporative Cooling
As water evaporates, it removes heat from surfaces, providing a cooling effect (e.g., sweating).
Versatile Solvent
Water's polarity makes it an excellent solvent, capable of dissolving many substances essential for life.
Solutions, Acids, and Bases
Solutions
Solution: A homogeneous mixture of two or more substances.
Solute: The substance dissolved (e.g., iced tea mix).
Solvent: The substance doing the dissolving (e.g., water).
Water is often called the "universal solvent" due to its ability to dissolve many substances.
pH Scale
The pH scale measures the concentration of hydrogen ions (H+) versus hydroxide ions (OH-) in a solution. The scale ranges from 0 (most acidic) to 14 (most basic).
pH 7: Neutral (pure water)
pH < 7: Acidic (more H+ ions)
pH > 7: Basic (more OH- ions)
Examples:
Pure water: pH 7
Soda: pH 3
Hair remover (Nair): pH 13
Additional info: The formula for pH is .
Chemical Equations
Reactants, Products, and Coefficients
Chemical equations represent the transformation of reactants into products during a chemical reaction.
Reactants: Substances that undergo change.
Products: Substances formed as a result of the reaction.
Coefficients: Numbers placed before compounds to indicate the number of molecules involved.
Subscripts: Numbers within chemical formulas indicating the number of atoms of each element in a molecule.
Example Equation:
Reactants: Glucose () and oxygen ()
Products: Carbon dioxide (), water (), and energy
Additional info: This equation represents cellular respiration, a key process in biology and biochemistry.
Summary Table: Atomic Particles
Particle | Charge | Location |
|---|---|---|
Proton | +1 | Nucleus |
Neutron | 0 | Nucleus |
Electron | -1 | Energy levels/orbitals |