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Multiple Choice
Where in a protein would you most likely find the R group (side chain) of a hydrophobic amino acid?
A
In the active site, forming hydrogen bonds with substrates
B
Buried in the interior of the protein, away from water
C
Exposed on the surface of the protein, interacting with water
D
Covalently bonded to a prosthetic group
Verified step by step guidance
1
Understand the nature of hydrophobic amino acids: Hydrophobic amino acids have nonpolar side chains that do not interact favorably with water. Examples include leucine, isoleucine, valine, and phenylalanine.
Recall protein structure and folding principles: Proteins fold in a way that minimizes unfavorable interactions with the surrounding aqueous environment. Hydrophobic side chains tend to be buried in the interior of the protein to avoid contact with water.
Consider the environment of the active site: The active site of a protein often contains polar or charged residues to interact with substrates via hydrogen bonding or ionic interactions. Hydrophobic residues are less likely to be found here unless they are involved in specific substrate binding.
Evaluate the surface of the protein: The surface of a protein is typically exposed to water, so hydrophilic (polar or charged) amino acids are more likely to be found here, interacting with the aqueous environment.
Conclude based on the options provided: Hydrophobic amino acids are most likely to be buried in the interior of the protein, away from water, as this arrangement is energetically favorable and consistent with protein folding principles.