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Multiple Choice
Why is the major groove of DNA a favorable site for protein binding?
A
It is less exposed to the cellular environment.
B
It is more flexible than the minor groove.
C
It provides more accessible hydrogen bond donors and acceptors.
D
It has a higher concentration of phosphate groups.
Verified step by step guidance
1
Understand the structure of DNA: DNA is a double helix composed of two strands that wind around each other. Each strand is made up of nucleotides, which include a phosphate group, a sugar molecule, and a nitrogenous base.
Identify the grooves in DNA: The double helix structure of DNA creates two grooves, known as the major groove and the minor groove. These grooves are spaces between the strands where proteins can potentially bind.
Explore the accessibility of hydrogen bonds: The major groove of DNA is wider than the minor groove, which means it provides more space for proteins to interact with the DNA. This increased space allows for more accessible hydrogen bond donors and acceptors, which are crucial for protein binding.
Consider the role of hydrogen bonds in protein-DNA interactions: Proteins often bind to DNA through hydrogen bonds, which are formed between the protein and the accessible hydrogen bond donors and acceptors in the major groove.
Evaluate why the major groove is favorable for protein binding: Due to the greater accessibility of hydrogen bond donors and acceptors in the major groove, it is a favorable site for protein binding compared to the minor groove, which is narrower and offers fewer opportunities for such interactions.