How do we know that there is an association between disease susceptibility in humans and regulatory DNA sequences?
Table of contents
- 1. Introduction to Genetics51m
- 2. Mendel's Laws of Inheritance3h 37m
- 3. Extensions to Mendelian Inheritance2h 41m
- 4. Genetic Mapping and Linkage2h 28m
- 5. Genetics of Bacteria and Viruses1h 21m
- 6. Chromosomal Variation1h 48m
- 7. DNA and Chromosome Structure56m
- 8. DNA Replication1h 10m
- 9. Mitosis and Meiosis1h 34m
- 10. Transcription1h 0m
- 11. Translation58m
- 12. Gene Regulation in Prokaryotes1h 19m
- 13. Gene Regulation in Eukaryotes44m
- 14. Genetic Control of Development44m
- 15. Genomes and Genomics1h 50m
- 16. Transposable Elements47m
- 17. Mutation, Repair, and Recombination1h 6m
- 18. Molecular Genetic Tools19m
- 19. Cancer Genetics29m
- 20. Quantitative Genetics1h 26m
- 21. Population Genetics50m
- 22. Evolutionary Genetics29m
10. Transcription
Transcription in Eukaryotes
Problem 1b
Textbook Question
What is the experimental basis for concluding that puffs in polytene chromosomes and loops in lampbrush chromosomes are areas of intense transcription of RNA?

1
Understand the context: Polytene chromosomes are found in certain tissues of organisms like Drosophila, and lampbrush chromosomes are observed in oocytes of amphibians. Both are specialized chromosome structures that allow for the study of transcriptional activity.
Review the experimental observations: Puffs in polytene chromosomes and loops in lampbrush chromosomes are regions where the chromatin is decondensed. This decondensation is associated with active transcription, as the DNA is more accessible to transcription machinery.
Consider the evidence from autoradiography: In experiments, radioactive uridine (a precursor for RNA synthesis) is incorporated into RNA. When cells are exposed to radioactive uridine, the labeled RNA accumulates in the puffed or looped regions, indicating active transcription.
Examine the use of electron microscopy: High-resolution imaging of these chromosomes shows RNA polymerase complexes actively transcribing DNA in the puffed or looped regions, further supporting the conclusion that these are sites of intense transcription.
Integrate the findings: The combination of chromatin decondensation, incorporation of radioactive precursors, and direct visualization of transcription machinery provides strong experimental evidence that puffs in polytene chromosomes and loops in lampbrush chromosomes are areas of intense RNA transcription.

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Key Concepts
Here are the essential concepts you must grasp in order to answer the question correctly.
Polytene Chromosomes
Polytene chromosomes are oversized chromosomes that consist of many identical chromatids aligned in parallel. They are found in certain tissues of organisms like Drosophila and are characterized by distinct banding patterns. The presence of puffs in these chromosomes indicates regions where DNA is actively being transcribed into RNA, reflecting high levels of gene expression.
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Chromosome Structure
Lampbrush Chromosomes
Lampbrush chromosomes are a type of chromosome found in the oocytes of many animals, characterized by their large size and extended loops. These loops represent regions of active transcription, where RNA is synthesized. The structure of lampbrush chromosomes allows for the visualization of transcriptional activity, making them a valuable model for studying gene expression.
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Chromosome Structure
Transcriptional Activity
Transcriptional activity refers to the process by which RNA is synthesized from a DNA template, leading to the production of messenger RNA (mRNA) and other RNA types. Areas of intense transcription are often indicated by structural changes in chromosomes, such as puffs and loops, which can be observed under a microscope. Experimental techniques, such as RNA labeling and in situ hybridization, help confirm these regions as sites of active gene expression.
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Eukaryotic Transcription
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