DNA footprint protection is a method that determines whether proteins bind to a specific sample of DNA and thus protect part of the DNA from random enzymatic cleavage by DNase I. A 400-bp segment of cloned DNA is thought to contain a promoter. The cloned DNA is analyzed by DNA footprinting to help determine if it has the capacity to act as a promoter sequence. The accompanying gel has two lanes, each containing the cloned 400-bp DNA fragment treated with DNase I to randomly cleave unprotected DNA. Lane 1 is cloned DNA that was mixed with RNA polymerase II and several TFII transcription factors before exposure to DNase I. Lane 2 contains cloned DNA that was exposed only to DNase I. RNA pol II and TFIIs were not mixed with that DNA before adding DNase I. Approximately what length is the DNA region protected by RNA pol II and TFIIs?
Table of contents
- 1. Introduction to Genetics51m
- 2. Mendel's Laws of Inheritance3h 37m
- 3. Extensions to Mendelian Inheritance2h 41m
- 4. Genetic Mapping and Linkage2h 28m
- 5. Genetics of Bacteria and Viruses1h 21m
- 6. Chromosomal Variation1h 48m
- 7. DNA and Chromosome Structure56m
- 8. DNA Replication1h 10m
- 9. Mitosis and Meiosis1h 34m
- 10. Transcription1h 0m
- 11. Translation58m
- 12. Gene Regulation in Prokaryotes1h 19m
- 13. Gene Regulation in Eukaryotes44m
- 14. Genetic Control of Development44m
- 15. Genomes and Genomics1h 50m
- 16. Transposable Elements47m
- 17. Mutation, Repair, and Recombination1h 6m
- 18. Molecular Genetic Tools19m
- 19. Cancer Genetics29m
- 20. Quantitative Genetics1h 26m
- 21. Population Genetics50m
- 22. Evolutionary Genetics29m
15. Genomes and Genomics
Bioinformatics
Struggling with Genetics?
Join thousands of students who trust us to help them ace their exams!Watch the first videoMultiple Choice
Which of the following is NOT a piece of information that bioinformatics can analyze?
A
Location of DNA-Protein binding sites
B
Identifying all the proteins expressed in a skin cell
C
A list of all introns in the genome
D
The function of one gene

1
Understand that bioinformatics is a field that uses computational tools to analyze biological data, particularly large datasets like genomes and proteomes.
Recognize that bioinformatics can analyze DNA sequences to identify features such as DNA-protein binding sites, which are crucial for understanding gene regulation.
Acknowledge that bioinformatics can also be used to identify and catalog proteins expressed in specific cell types, such as skin cells, through techniques like transcriptomics and proteomics.
Note that bioinformatics can provide a list of introns in a genome by analyzing the genomic sequence and identifying non-coding regions within genes.
Realize that determining the function of a gene typically requires experimental validation and is not solely reliant on computational analysis, making it distinct from the other tasks listed.
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